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theMILOlab / SPATA2

A Toolbox for Spatial Transcriptomics Analysis
https://themilolab.github.io/SPATA2/
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Implement trajectory analysis on spatial data without images #200

Open yuGithuuub opened 6 days ago

yuGithuuub commented 6 days ago

Hi Jan, I am using SPATA2 on a Xenium dataset . I want to create a spatial trajectory in the image to view the spatial distribution of specified cell types. But currently the ”createSpatialTrajectories“ function requires img data to exist in the object. Is there any way to achieve such a function? Thank you very much.

kueckelj commented 4 days ago

Hello, can you install SPATA2 again but with devtools::install_github("kueckelj/SPATA2")? currentSpata2Version() should give 3.1.3. It should work now without images.