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theMILOlab / SPATA2

A Toolbox for Spatial Transcriptomics Analysis
https://themilolab.github.io/SPATA2/
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Problems with transformSeuratToSpata #84

Closed llllkn closed 11 months ago

llllkn commented 1 year ago

I tried using the "transformSeuratToSpata" function to convert the spatial transcriptomics data from Seurat to Spata. The "images" variable I used contains information about the tissue slices. However, after applying the function, my "coordinates" remain as 0. Could you please advise on what might be causing this issue? 微信截图_20230801165136 微信图片_20230801165154

simonmfr commented 1 year ago

Hi @llllkn, thank you for reaching out.

Can you please try asSPATA2()? transformSeuratToSpata() has been deprecated in the meantime.

For a tutorial see: https://themilolab.github.io/SPATA2/articles/spata-v2-platform-compatibility.html

Best, Simon

simonmfr commented 11 months ago

Closed due to inactivity, please feel free to re-open.