Is there an integrated SPATA object with all the tumor samples?

theMILOlab / SPATAData

The database for spatially resolved transcriptomics

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Is there an integrated SPATA object with all the tumor samples? #7

Open mattli7 opened 4 months ago

mattli7 commented 4 months ago

I was wondering if there is an integrated SPATA object with all the tumor samples? I was wondering if an SPATA object/RDS for all the tumor samples with spatial transcriptomics exist?

kueckelj commented 3 months ago

Hello, no that does not exist. You can, however, download the samples of interest with SPATAData, extract the count matrices via getCountMatrix() and integrate them yourself. For horizontal integration, I recommend Seurat.