Closed rob123king closed 5 years ago
I am trying the below on AWS but not finding the reference even though path is correct, any ideas what needs changing on the command?
docker run -v /home/ec2-user/test_hic:/data -v /home/ec2-user/test_hic:/juicerdir aidenlab/juicer:latest -d /data -z /home/ec2-user/test_hic/references/Homo_sapiens_assembly19.fasta -y /home/ec2-user/test_hic/restriction_sites/hg19_MboI.txt -p hg19 -s MboI ***! Reference sequence /home/ec2-user/test_hic/references/Homo_sapiens_assembly19.fasta does not exist
ls fastq references restriction_sites
ls Homo_sapiens_assembly19.fasta Homo_sapiens_assembly19.fasta.ann Homo_sapiens_assembly19.fasta.pac Homo_sapiens_assembly19.fasta.amb Homo_sapiens_assembly19.fasta.bwt Homo_sapiens_assembly19.fasta.sa
I am trying the below on AWS but not finding the reference even though path is correct, any ideas what needs changing on the command?
docker run -v /home/ec2-user/test_hic:/data -v /home/ec2-user/test_hic:/juicerdir aidenlab/juicer:latest -d /data -z /home/ec2-user/test_hic/references/Homo_sapiens_assembly19.fasta -y /home/ec2-user/test_hic/restriction_sites/hg19_MboI.txt -p hg19 -s MboI ***! Reference sequence /home/ec2-user/test_hic/references/Homo_sapiens_assembly19.fasta does not exist
ls fastq references restriction_sites
ls Homo_sapiens_assembly19.fasta Homo_sapiens_assembly19.fasta.ann Homo_sapiens_assembly19.fasta.pac Homo_sapiens_assembly19.fasta.amb Homo_sapiens_assembly19.fasta.bwt Homo_sapiens_assembly19.fasta.sa