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theboocock / OtagoGalaxy

1000 genomes and Merriman Lab Galaxy
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Haplogrep #6

Open a-gosling opened 11 years ago

a-gosling commented 11 years ago

Could Haplogrep perhaps be added to Galaxy (even though no one else will probably ever use this ever)? If so, possibly some kind of file converter will probably need to be added, as I don't be lieve Haplogrep enjoys vcf files. Thanks!

theboocock commented 11 years ago

Will read into exactly what is required at some point today and start working on a converter. :P

a-gosling commented 11 years ago

Cool. Thanks. That would be brilliant!

From: James Boocock [notifications@github.com] Sent: Monday, 8 July 2013 9:55 a.m. To: smilefreak/OtagoGalaxy Cc: Anna Gosling Subject: Re: [OtagoGalaxy] Haplogrep (#6)

Will read into exactly what is required at some point today and start working on a converter. :P

— Reply to this email directly or view it on GitHubhttps://github.com/smilefreak/OtagoGalaxy/issues/6#issuecomment-20578330.

a-gosling commented 11 years ago

Hey James,

How’s that file converter thingy coming along? Sorry to bug you, but I am impatient (and have a meeting with both supervisors on Monday – and want to persuade Tony that it’s worthwhile to sequence more mt genomes. I’m not sure little allele frequencies from Galaxy will be enough to do that. haha)

Cheers, Anna

From: James Boocock [mailto:notifications@github.com] Sent: Monday, 8 July 2013 9:55 a.m. To: smilefreak/OtagoGalaxy Cc: Anna Gosling Subject: Re: [OtagoGalaxy] Haplogrep (#6)

Will read into exactly what is required at some point today and start working on a converter. :P

— Reply to this email directly or view it on GitHubhttps://github.com/smilefreak/OtagoGalaxy/issues/6#issuecomment-20578330.

theboocock commented 11 years ago

Tell us when you need haplogrep and I will add it into my to do list :P. Shouldn't take too long but they have given me about 6000 jobs atm. But it does need to be available for when you need it Tony said.

a-gosling commented 11 years ago

Well, it’s not majorly urgent. I’ve probably got enough to do at the moment with sorting out what samples to sequence and stuff and then actually prepping the DNA for sequencing – which probably gives you a month or so leeway, I’d say. Maybe you should work on some of the other 6000 odd jobs in the meantime. :-)

From: James Boocock [mailto:notifications@github.com] Sent: Wednesday, 17 July 2013 12:19 p.m. To: smilefreak/OtagoGalaxy Cc: Anna Gosling Subject: Re: [OtagoGalaxy] Haplogrep (#6)

Tell us when you need haplogrep and I will add it into my to do list :P. Shouldn't take too long but they have given me about 6000 jobs atm. But it does need to be available for when you need it Tony said.

— Reply to this email directly or view it on GitHubhttps://github.com/smilefreak/OtagoGalaxy/issues/6#issuecomment-21083918.