search

thechiselgroup / biomixer

BioMixer
http://bio-mixer.appspot.com/
16 stars 13 forks source link

broken "path to root" & "term neighbourhood" #145

Closed ghost closed 10 years ago

cpetrachenko commented 12 years ago

on Mac & Windows, slow/broken "path to root" & "term neighbourhood": http://bioportal-integration.bio-mixer.appspot.com/?mode=embed&embed_mode=paths_to_root&virtual_ontology_id=1353&full_concept_id=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F105590001&userapikey=

drusk commented 12 years ago

When trying to load this in Chrome I keep getting server timeout errors (seen with developer tools):

SEVERE: server timeout - Could not retrieve full term information for http://purl.bioontology.org/ontology/SNOMEDCT/105590001 org.thechiselgroup.biomixer.client.visualization_component.graph.CallbackException: server timeout - Could not retrieve full term information for http://purl.bioontology.org/ontology/SNOMEDCT/105590001 at Unknown.Ad(Unknown Source) at Unknown.LXc(Unknown Source) at Unknown.RRc(Unknown Source) at Unknown._0b(Unknown Source) at Unknown.d1b(Unknown Source) at Unknown.Moc(Unknown Source) at Unknown.T0b(Unknown Source) Caused by: com.google.gwt.jsonp.client.TimeoutException: Timeout while calling http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-44336cbc0a3a&userapikey=&path=%2Fvirtual%2Fontology%2F1353%3Fconceptid%3Dhttp%253A%252F%252Fpurl.bioontology.org%252Fontology%252FSNOMEDCT%252F105590001 at Unknown.zd(Unknown Source) at Unknown.Gd(Unknown Source) at Unknown.LF(Unknown Source) at Unknown.DF(Unknown Source) at Unknown.sf(Unknown Source) at Unknown.anonymous(Unknown Source) at Unknown.ek(Unknown Source)

drusk commented 12 years ago

When loading http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-44336cbc0a3a&userapikey=&path=%2Fvirtual%2Fontology%2F1353%3Fconceptid%3Dhttp%253A%252F%252Fpurl.bioontology.org%252Fontology%252FSNOMEDCT%252F105590001 in Chrome it takes nearly 20 seconds to return. The default timeout for the JsonpRequestBuilder used in JsonpUrlFetchService is only 10 seconds.