Closed gt1 closed 7 years ago
It was there but I took it out once I generalized HPC.daligner to do a data set against itself, and to do a data set against another. I think of HPC.daligner as a script generator for these instances, in which case -I doesn't make sense.
-I is really only useful if you are looking for tandems or internal structure. HPC.tandem does that better.
-- Gene
On 12/7/16, 12:26 PM, German Tischler wrote:
daligner has the -I flag for computing alignments between a read and itself. This flag is missing in HPC.daligner. I think it would be useful to have it in HPC.daligner as well.
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/thegenemyers/DALIGNER/issues/53, or mute the thread https://github.com/notifications/unsubscribe-auth/AGkkNszw-v4V5lVZrVVIMLz5aDLcnRofks5rFpfbgaJpZM4LGe9G.
daligner has the -I flag for computing alignments between a read and itself. This flag is missing in HPC.daligner. I think it would be useful to have it in HPC.daligner as well.