Closed pb-cdunn closed 6 years ago
Yes, you are correct. Corner case that I missed. Fixed now. -- Gene
On 11/6/17, 3:56 PM, Christopher Dunn wrote:
|HPC.daligner comp ../0-rawreads/raw_reads.db| bash -vex
Daligner jobs (1)
daligner -A -k20 -h50 -e0.85 ../0-rawreads/raw_reads comp && mv raw_reads.comp ../0-rawreads
- daligner -A -k20 -h50 -e0.85 ../0-rawreads/raw_reads comp
- mv raw_reads.comp ../0-rawreads mv: cannot stat `raw_reads.comp': No such file or directory |
The file is named |raw_reads.comp.las|.
Here is the output of HPC.daligner:
|# Daligner jobs (1) daligner -A -k20 -h50 -e0.85 ../0-rawreads/raw_reads comp && mv raw_reads.comp ../0-rawreads
Check initial .las files jobs (1) (optional but recommended)
LAcheck -vS ../0-rawreads/raw_reads comp ../0-rawreads/raw_reads.comp |
This error does /not/ occur in our current fork, which is a bit behind, so this is a recent bug.
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The file is named
raw_reads.comp.las
.Here is the output of HPC.daligner:
This error does not occur in our current fork, which is a bit behind, so this is a recent bug.