If selecting a subset of reads on the CLI it could happen that the trace buffer would overflow. This is prevented by not reading the trace of "unrequested" alignments but rather skipping them using fseek.
Arne,
Thanks for reporting this bug. I've fixed it in a somewhat simpler way and that version will be available the next time I commit my local copy to github.
-- Gene
If selecting a subset of reads on the CLI it could happen that the trace buffer would overflow. This is prevented by not reading the trace of "unrequested" alignments but rather skipping them using
fseek
.