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thegenemyers / DALIGNER

Find all significant local alignments between reads
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Output trace point spacing (`-s`) in `LAdump` #89

Closed a-ludi closed 4 years ago

a-ludi commented 4 years ago

I am using the trace points in my program but LAdump does not output the trace point spacing therefore I have to "guess", e.i. the user has to supply a non-default value manually. This is prone to errors and makes the user interface more complex than necessary. So I propose to output the value in the dump either (1) as an additional header line or (2) as an additional column of T lines.

thegenemyers commented 4 years ago

Actually, it does. There is a line X # that occurs once in the header, where # is the trace spacing. -- Gene

On 9/30/19, 3:00 PM, Arne wrote:

I am using the trace points in my program but |LAdump| does not output the trace point spacing therefore I have to "guess", e.i. the user has to supply a non-default value manually. This is prone to errors and makes the user interface more complex than necessary. So I propose to output the value in the dump either (1) as an additional header line or (2) as an additional column of |T| lines.

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a-ludi commented 4 years ago

Oh, that's very cool. I did not realize because it was a rather recent change.