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thegenemyers / DAZZ_DB

The Dazzler Data Base
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fasta2DB still gives an error message when using ccs data #40

Closed bernardo1963 closed 5 years ago

bernardo1963 commented 5 years ago

Hi Gene, The latest version of fasta2DB was said to accept ccs deflines. I download today (May 8th 2019; using git) and compiled the DAZZ_db suite, in order to use fasta2DB with ccs data. However, the fasta2DB still complained: File teste2.fasta, Line 1: Pacbio header line format error When I replaced the "/ccs" from the fasta defline by , say, "/1_20000" fasta2DB accepted the sequence. It seems that the code was not updated.

thegenemyers commented 5 years ago

I had put code in to do so and thought I had fixed it as I built a DB from a CCS data set ! But I checked the code and found a bug that I must have introduced after the fact. It is fixed in the update of a few minutes ago. Apologies, Gene

On 5/8/19, 11:26 PM, bernardo1963 wrote:

Hi Gene, The latest version of fasta2DB was said to accept ccs deflines. I download today (May 8th 2019; using git) and compiled the DAZZ_db suite, in order to use fasta2DB with ccs data. However, the fasta2DB still complained: File teste2.fasta, Line 1: Pacbio header line format error When I replaced the "/ccs" from the fasta defline by , say, "/1_20000" fasta2DB accepted the sequence. It seems that the code was not updated.

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