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thegenemyers / MERQURY.FK

FastK based version of Merqury
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spectra-cn plots are empty for my test dataset. #10

Closed mahesh-panchal closed 2 years ago

mahesh-panchal commented 2 years ago

Hi, I have an issue where my spectra-cn plots are blank although the spectra-asm plots are not. I'm not sure what I'm missing. The basic command I've run is:

FastK \
    -t \
    -T2 \
    -Ntest_fk \
    test_1.fastq.gz
MerquryFK \
    -lfs \
    -T2 \
    test_fk.ktab \
    genome.fasta \
    test

and the *.spectra-cn plots are all blank. These are the R packages installed c("minpack.lm","argparse","ggplot2","scales","viridis","cowplot"). The test dataset files are:

https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta
https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/illumina/fastq/test_1.fastq.gz
mahesh-panchal commented 2 years ago

Closing. Nothing was wrong with the installation. Just insufficient data.