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thegenemyers / MERQURY.FK

FastK based version of Merqury
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PloidyPlot sh: Logex: command not found #14

Open xiekunwhy opened 1 year ago

xiekunwhy commented 1 year ago

Hi,

When I use PloidyPlot, I get these errors, PloidyPlot -T4 fastk sh: Logex: command not found PloidyPlot: Something went wrong with command: Logex -T4 '.trim=A[4-]' fastk

and

"KatGC -T4 fastk fastk" output nothing.

Do you know why?

Best, Kun

vilperte commented 9 months ago

I just faced the same error. Logex is part of the FASTK tool, so you actually need to put it in your PATH for MERQURY.FK to be able to use it.

xiekunwhy commented 5 months ago

When I install MERQURY.FK from conda, the error was disappeared, but both PloidyPlot and KatGC output nothing.

astrovsky01 commented 3 months ago

@xiekunwhy I was the one who wrapped that conda package -- I hadn't realized that it also needs access to ggplot and other r packages, since it didn't output errors when that happened. I will update it soon, but in the mean time, you should be able to install those into your conda environments and rerun to generate the plots