Open xiekunwhy opened 1 year ago
I just faced the same error. Logex
is part of the FASTK
tool, so you actually need to put it in your PATH
for MERQURY.FK
to be able to use it.
When I install MERQURY.FK from conda, the error was disappeared, but both PloidyPlot and KatGC output nothing.
@xiekunwhy I was the one who wrapped that conda package -- I hadn't realized that it also needs access to ggplot and other r packages, since it didn't output errors when that happened. I will update it soon, but in the mean time, you should be able to install those into your conda environments and rerun to generate the plots
Hi,
When I use PloidyPlot, I get these errors, PloidyPlot -T4 fastk sh: Logex: command not found PloidyPlot: Something went wrong with command: Logex -T4 '.trim=A[4-]' fastk
and
"KatGC -T4 fastk fastk" output nothing.
Do you know why?
Best, Kun