two tests fail in scipy0.6.0 (but work in svn)

[GoogleCodeExporter]

All tests should pass:

$ ./runTests.py --filter-more
<<< directory: tests, test files: 13
+++ test_structAdd: ok
+++ test_structIAdd: ok
+++ test_linear_terms: ok
+++ test_input: ok
+++ test_input: ok
+++ test_input: ok
+++ test_input: ok
+++ test_recursiveDictHDF5: ok
+++ test_sparseMatrixHDF5: ok
--- test_linearRigidBodyBC: failed!
--- test_linearRigidBodyBC: failed!
+++ test_parseEquations: ok
+++ test_parseRegions: ok
+++ test_pbc: ok
+++ test_pbc: ok
+++ test_problemCreation: ok
13 test file(s) executed in 24.51 s, 2 failure(s) of 16 test(s)

The two failing tests are due to the fact, that in the latest released
scipy (0.6.0) you cannot use generalized indices:

  File "/usr/lib/python2.4/site-packages/scipy/sparse/sparse.py", line
2450, in __setitem__
    raise ValueError, "invalid index value: %s" % str((i, j))
ValueError: invalid index value: (array([  16,   17,   18, ..., 7095, 7096,
7097]), array([   0,    1,    2, ..., 5689, 5690, 5691]))

which is fixed in the svn version of scipy. 

Is it possible to add a fix to support both scipy0.6.0 and svn? I think we
should not depend on svn versions of other libraries when possible, so that
we can just come to a different system, install standard packages (using
apt-get in Debian, something else in gentoo) and then sfepy should work. 

If it is too much pain to support scipy0.6.0, then of course it's not worthy.

Original issue reported on code.google.com by ondrej.c...@gmail.com on 5 Feb 2008 at 1:29

[GoogleCodeExporter]

This functionality depends on the ability to extract a submatrix from a scipy 
CSR
matrix. It cannot work without this ability reasonably -> in this case I am for
waiting for a next scipy release. Anyway, linearRigidBodyBC is a special thing 
that
majority of people do not need.

Original comment by robert.c...@gmail.com on 5 Feb 2008 at 1:38

[GoogleCodeExporter]

ok, in this case I suggest to check the version of scipy in the tests and do not
execute them for scipy 0.6.0.

Patch implementing this attached.

Original comment by ondrej.c...@gmail.com on 5 Feb 2008 at 1:46

• Added labels: Type-Patch
• Removed labels: Type-Defect

Attachments:

• scipy2.patch

[GoogleCodeExporter]

fine solution, thanks!

Original comment by robert.c...@gmail.com on 5 Feb 2008 at 1:56

• Changed state: Fixed

[GoogleCodeExporter]

Works fine for me now. I forgot to write a meaningful log into the patch. Next 
time. :)

Original comment by ondrej.c...@gmail.com on 5 Feb 2008 at 1:58

• Changed state: Verified

[GoogleCodeExporter]

Migrated to http://github.com/sfepy/sfepy/issues/15

Original comment by robert.c...@gmail.com on 30 Jan 2012 at 10:23

• Changed state: Migrated