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Add topics to PIONEER conventions
#24
Closed
MaximMoinat
closed
3 years ago
MaximMoinat
commented
3 years ago
[x]
AvW
Date
If only year, use 07-01
No year, skip record (if a special reason to keep, use 1970-01-01)
In case of medical history: capture as 'History of' and use date of capturing this medical history
Derivation: from linked visit or linked epoch (for SDTM)
[x]
AvW
Condition
4163261 - tumor of prostate
37208188 - non-metastatic (BCR)
[x]
AvW
Person
Only year of birth required. Month of birth may be given. Day of birth should not be mapped, even if available.
No race or ethnicity → may be set to 0
[x]
MM
Death
Double mapping; person.death_datetime and death table
cause of death in condition table
[x]
MM
Type concept
32879 - registry --> PRIAS and AB
[x]
MM
Visits
Custom concepts. Baseline, Follow-up and increment number. Map full granularity of visit.
[x]
SP
Episodes example (PRIAS)
https://thehyve.github.io/ohdsi-etl-prias/episode.html
Used for grouping certain related events (e.g. lesion and biopsy)
[x]
SP
Measurement modifier example (AB)
Link to documentation from Oncology working group on episodes and measurement modifier.
[x]
SP
Do not capture negatives (e.g. a condition that someone was not diagnosed with or procedure not performed)
If negative has to be captured for a use case, we can store as observation with concept_id 'No evidence of' and value_concept_id.