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thehyve / ukbiobank-omop-etl

Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
https://thehyve.github.com/ukbiobank-omop-etl
GNU General Public License v3.0
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Deployment and usage guidelines #7

Open allowishus opened 3 years ago

allowishus commented 3 years ago

This looks like a wonderful and much-needed project! It would be tremendously helpful to have some guidance in the readme for how to make use of this, namely:

  1. Any preprocessing steps that users may need to run on raw UK Biobank data
  2. How to run the code in this repo and perform the OMOP CDM ETL
  3. How to validate that the process worked in something like OHDSI ATLAS
MaximMoinat commented 3 years ago

Hi @allowishus. Great that you have found our repo and your interest in UKB to OMOP conversion. However, this was just an initial exploration as a start of an actual mapping effort. Could we get in touch to discuss what we can do for you? You can reach out to us through https://www.thehyve.nl/contact.

allowishus commented 3 years ago

Thanks for the quick response. I've just reached out via your website.

privefl commented 2 years ago

Is there any tutorial on how to do this conversion for UKBB anywhere?

spiros commented 2 years ago

hey @privefl - this repository has code from some initial experiments - we are going to open source the final code for the entire process in the next week or so.