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theiagen / public_health_bacterial_genomics

GNU Affero General Public License v3.0
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add MIDAS for contamination detection #143

Closed kapsakcj closed 2 years ago

kapsakcj commented 2 years ago

This runs as part of BioNumerics for detecting "secondary species abundance"

requested by a few labs now

https://github.com/snayfach/MIDAS

No staphb docker image, but I think it's on bioconda/biocontainers or alternatively here: https://github.com/FredHutch/docker-midas