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theiagen / public_health_bacterial_genomics

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add seroba outputs to SE #193

Closed sage-wright closed 1 year ago

sage-wright commented 1 year ago

They are currently missing

kapsakcj commented 1 year ago

I think seroba only supports paired end? Not 100% sure though, it's not clearly stated on the seroba README.md

kapsakcj commented 1 year ago

Did we confirm that seroba cannot accept single end illumina data? If so, can we close this issue?

sage-wright commented 1 year ago

yes, it's paired-end only i believe.