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theiagen / public_health_bacterial_genomics

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Request for Neisseria typing #205

Closed michellescribner closed 1 year ago

michellescribner commented 1 year ago

Create tasks for https://github.com/MDU-PHL/ngmaster and https://github.com/MDU-PHL/meningotype as in Bactopia?

kapsakcj commented 1 year ago

Already have tasks both, though I don't think they are part of the workflows yet:

https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/species_typing/task_ngmaster.wdl

https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/species_typing/task_meningotype.wdl

michellescribner commented 1 year ago

Ah! I should have looked closer, thank you! Revising request to incorporate them into TheiaProk when we have a chance. I just received an email request about it and believe it has come up previously as well

kapsakcj commented 1 year ago

PR #211 will address this. Just posting here for tracking purposes