search

theiagen / public_health_bacterial_genomics

GNU Affero General Public License v3.0
26 stars 14 forks source link

add missing tbprofiler optional outputs to export_taxon_tables inputs #224

Closed cimendes closed 1 year ago

cimendes commented 1 year ago

Missing:

            tbprofiler_additional_outputs_csv = merlin_magic.tbprofiler_additional_outputs_csv,
            tbprofiler_laboratorian_report_csv = merlin_magic.tbprofiler_laboratorian_report_csv,
            tbprofiler_gene_name = merlin_magic.tbprofiler_gene_name,
            tbprofiler_locus_tag = merlin_magic.tbprofiler_locus_tag,
            tbprofiler_variant_substitutions = merlin_magic.tbprofiler_variant_substitutions,
            tbprofiler_output_seq_method_type = merlin_magic.tbprofiler_output_seq_method_type,

In both TheiaProk_Illumina_PE and TheiaProk_Illumina_SE