Closed sage-wright closed 8 months ago
Test with current version on main
on a set of 5 GISAID sequences with mismatch headers and sample_ids: https://job-manager.dsde-prod.broadinstitute.org/jobs/05f84977-c2fe-4e0f-9395-a8bf1ebd26c3
It was a failure as expected
:bug:
:pencil: Describe the Issue
Nextclade output uses the FASTA header line to separate results. These headers don't always match the name of the FASTA file which is what is used. Because of this results don't get properly populated to the Terra table. No workflow failure occurs.
:repeat: How to Reproduce
:fishing_pole_and_fish: Expected Behavior
Either (a) rename the fasta header with samplename, or (b) translate fasta header to samplename elsewhere
:floppy_disk: Version Information
:information_source: Additional Information