Kraken2 report output variable type breaks export taxon table task - Githubissues

theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

GNU General Public License v3.0

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Kraken2 report output variable type breaks export taxon table task #298

Closed cimendes closed 6 months ago

cimendes commented 6 months ago

:bug:

:pencil: Describe the Issue

As observed in https://app.terra.bio/#workspaces/theiagen-validations/PHB_Validation_v1-3-0/job_history/1892d049-06c6-4bbe-90cb-7e1cc785da0a

:repeat: How to Reproduce

Was this run on the Terra platform?
- Terra on GCP or Azure?
Or were the workflows run locally using miniwdl or cromwell?
- What was the exact command was used to launch the workflow?
If possible, we may ask you to share your Terra workspace with us. Usually READER access is sufficient, but we may ask for WRITER access if we need to make changes to the workspace to reproduce the issue.

:fishing_pole_and_fish: Expected Behavior

:floppy_disk: Version Information

:information_source: Additional Information