The Samples_To_Ref_Tree_PHB workflow uses nextclade and therefore the current organism input is nextclade's nextclade_dataset_name. To avoid confusion with Theiagen workflows' organism input that is different from nextclade's, the input should be renamed accordingly.
The
Samples_To_Ref_Tree_PHBworkflow uses nextclade and therefore the current organisminputis nextclade'snextclade_dataset_name. To avoid confusion with Theiagen workflows'organisminput that is different from nextclade's, the input should be renamed accordingly.