As the next step for TheiaMeta development, binning can be implemented.
:books: Context
After an in-house assessment of binning performance, SemiBin2 was selected as the most suitable software for this purpose. It requires sorted bams of the metagenomic assembly files, and produces an array of fastas, one for each bin.
:chart_with_upwards_trend: Desired Behavior
If a reference is not provided, the metagenomic assembly goes through binning after mapping the read files to the assembly (with BWA). As output, an array of fasta files is provided to the Terra data table.
:cool:
:pushpin: Explain the Request
As the next step for TheiaMeta development, binning can be implemented.
:books: Context
After an in-house assessment of binning performance, SemiBin2 was selected as the most suitable software for this purpose. It requires sorted bams of the metagenomic assembly files, and produces an array of fastas, one for each bin.
:chart_with_upwards_trend: Desired Behavior
If a reference is not provided, the metagenomic assembly goes through binning after mapping the read files to the assembly (with BWA). As output, an array of fasta files is provided to the Terra data table.
:information_source: Additional Information