🗑️ This dev branch should be deleted after merging to main.
:brain: Aim, Context and Functionality
:hammer_and_wrench: Impacted Workflows/Tasks & Changes Being Made
This will affect the behavior of the workflow(s) even if users don’t change any workflow inputs relative to the last version : No
Running this workflow on different occasions could result in different results, e.g. due to use of a live database, "latest" docker image, or stochastic data processing : No
:clipboard: Workflow/Task Step Changes
🔄 Data Processing
Docker/software or software versions changed:
Databases or database versions changed:
Data processing/commands changed:
BioSample package "OneHealthEnteric" added
bioproject_accession is now an optional column that can be different for every sample instead of doing a single submission by bioproject
File processing changed:
Compute resources changed:
➡️ Inputs
⬅️ Outputs
:test_tube: Testing
Test Dataset
Commandline Testing with MiniWDL or Cromwell (optional)
Terra Testing
Testing being undertaken by the CC PHL.
Suggested Scenarios for Reviewer to Test
Theiagen Version Release Testing (optional)
:microscope: Final Developer Checklist
[ ] The workflow/task has been tested locally and results, including file contents, are as anticipated
[ ] The workflow/task has been tested on Terra and results, including file contents, are as anticipated
[x] The CI/CD has been adjusted and tests are passing (to be completed by Theiagen developer)
This PR closes #342
🗑️ This dev branch should be deleted after merging to main.
:brain: Aim, Context and Functionality
:hammer_and_wrench: Impacted Workflows/Tasks & Changes Being Made
This will affect the behavior of the workflow(s) even if users don’t change any workflow inputs relative to the last version : No
Running this workflow on different occasions could result in different results, e.g. due to use of a live database, "latest" docker image, or stochastic data processing : No
:clipboard: Workflow/Task Step Changes
🔄 Data Processing
Docker/software or software versions changed:
Databases or database versions changed:
Data processing/commands changed:
File processing changed:
Compute resources changed:
➡️ Inputs
⬅️ Outputs
:test_tube: Testing
Test Dataset
Commandline Testing with MiniWDL or Cromwell (optional)
Terra Testing
Testing being undertaken by the CC PHL.
Suggested Scenarios for Reviewer to Test
Theiagen Version Release Testing (optional)
:microscope: Final Developer Checklist
🎯 Reviewer Checklist
🗂️ Associated Documentation (to be completed by Theiagen developer)