PulseNet Illumina runs in which "runs are run through the BaseSpace toolkit to make a bcl file conversion and down-sample the coverage and the files are then placed to a new project" are not found by BaseSpace_Fetch_PHB workflow.
:repeat: How to Reproduce
Was this run on the Terra platform?
Terra on GCP or Azure?
Or were the workflows run locally using miniwdl or cromwell?
What was the exact command was used to launch the workflow?
If possible, we may ask you to share your Terra workspace with us. Usually READER access is sufficient, but we may ask for WRITER access if we need to make changes to the workspace to reproduce the issue.
:bug:
:pencil: Describe the Issue
PulseNet Illumina runs in which "runs are run through the BaseSpace toolkit to make a bcl file conversion and down-sample the coverage and the files are then placed to a new project" are not found by BaseSpace_Fetch_PHB workflow.
:repeat: How to Reproduce
miniwdlorcromwell?:fishing_pole_and_fish: Expected Behavior
:floppy_disk: Version Information
:information_source: Additional Information