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theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
GNU General Public License v3.0
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[TheiaCoV] Make the organism input mandatory in TheiaCoV workflow series #386

Open cimendes opened 3 months ago

cimendes commented 3 months ago

:cool:

:pushpin: Explain the Request

Now with the organism parameter sub-workflow, it's much easier to set all the necessary defaults. By forcing people to set the organisms, we can avoid a lot of trouble with inputs being overwritten by mistake for the sc2 default.