theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
GNU General Public License v3.0
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update bakta to latest version; host the "full" db as well as "light" db on requester pays bucket #445

Open kapsakcj opened 2 months ago

kapsakcj commented 2 months ago

:cool:

:pushpin: Explain the Request

Requested from 2 PHLs in NE region

We currently use v1.5.1 of bakta

latest available version as of today is 1.9.3 https://github.com/oschwengers/bakta/releases/tag/v1.9.3

databases are available via: https://github.com/oschwengers/bakta?tab=readme-ov-file#database-download

information on databases can be found here: https://github.com/oschwengers/bakta?tab=readme-ov-file#database

:books: Context

:chart_with_upwards_trend: Desired Behavior

:information_source: Additional Information