[TheiaProk and TheiaMeta] Add CheckM for assembly QC (completeness and contamination)

theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

GNU General Public License v3.0

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[TheiaProk and TheiaMeta] Add CheckM for assembly QC (completeness and contamination) #476

Open cimendes opened 4 months ago

cimendes commented 4 months ago

:cool:

:pushpin: Explain the Request

A nice alternative to busco, refseq and GTDB both run checkM to evaluate the assemblies in their database so it's nice for comparison purposes with published data