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theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
GNU General Public License v3.0
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Make MIDAS optional in TheiaProk #493

Closed andrewjpage closed 3 months ago

andrewjpage commented 4 months ago

:bug:

:pencil: Describe the Issue

Make MIDAS optional in TheiaProk. It costs a fair bit to run so only run it if specifically requested.

sage-wright commented 4 months ago

@andrewjpage, we turned MIDAS on by default due to user request

sage-wright commented 4 months ago

I know @michellescribner was a big advocate for making this by default