[all workflows] upgrade PHB version to 2.1.0

[kapsakcj]

This PR closes #513

🗑️ This dev branch should be deleted after merging to main.

:brain: Aim, Context and Functionality

upgrade the PHB version to 2.1.0 ahead of the release

:hammer_and_wrench: Impacted Workflows/Tasks & Changes Being Made

This will affect the behavior of the workflow(s) even if users don’t change any workflow inputs relative to the last version : Yes

Running this workflow on different occasions could result in different results, e.g. due to use of a live database, "latest" docker image, or stochastic data processing : No

:clipboard: Workflow/Task Step Changes

🔄 Data Processing

Docker/software or software versions changed: task_versioning.wdl upgraded to output PHB v2.1.0

Databases or database versions changed: N/A

Data processing/commands changed: N/A

File processing changed: N/A

Compute resources changed: N/A

➡️ Inputs

N/A

⬅️ Outputs

All PHB workflows will now output PHB v2.1.0

:test_tube: Testing

Test Dataset

Doesn't matter, just need to test on at least one workflow

Commandline Testing with MiniWDL or Cromwell (optional)

skipped

Terra Testing

Testing w theiacov_fasta: https://app.terra.bio/#workspaces/theiagen-validations/curtis-sandbox-theiagen-validations/job_history/c5986459-6e09-4c2c-949e-120f893f1c55 ⚠️ need to review version output

✅ version output is updated as expected

Suggested Scenarios for Reviewer to Test

Test any workflow that runs the task_versioning.wdl task, which is almost everything

Theiagen Version Release Testing (optional)

• Will changes require functional or validation testing (checking outputs etc) during the release? functional
• Do new samples need to be added to validation datasets? If so, upload these to the appropriate validation workspace Google bucket (). Please describe the new samples here and why these have been chosen. No
• Are there any output files that should be checked after running the version release testing? No

:microscope: Final Developer Checklist

• [x] The workflow/task has been tested locally and results, including file contents, are as anticipated
• [x] The workflow/task has been tested on Terra and results, including file contents, are as anticipated
• [x] The CI/CD has been adjusted and tests are passing (to be completed by Theiagen developer)
• [x] Code changes follow the style guide

🎯 Reviewer Checklist

• [ ] All impacted workflows/tasks have been tested on Terra with a different dataset than used for development
• [ ] All reviewer-suggested scenarios have been tested and any additional
• [ ] All changed results have been confirmed to be accurate
• [ ] All workflows/tasks impacted by change/s have been tested using a standard validation dataset to ensure no unintended change of functionality
• [ ] All code adheres to the style guide
• [ ] MD5 sums have been updated
• [ ] The PR author has addressed all comments

🗂️ Associated Documentation (to be completed by Theiagen developer)

• [ ] Relevant documentation on the Public Health Resources "PHB Main" has been updated
• [x] Workflow diagrams have been updated to reflect changes. Not necessary to update diagrams

[kapsakcj]

I am not entirely sure what in the documentation other than the main Notion page title "PHB v2.1.0" needs to be updated so I have left that unchecked

[cimendes]

the ⭐ strikes again!