This PR fixes a small typo identified while troubleshooting with a laboratory using the Terra_2_NCBI_PHB workflow to submit SC2 wastewater data.
🗑️ This dev branch should be deleted after merging to main.
:brain: Aim, Context and Functionality
:hammer_and_wrench: Impacted Workflows/Tasks & Changes Being Made
This will affect the behavior of the workflow(s) even if users don’t change any workflow inputs relative to the last version : Yes
Running this workflow on different occasions could result in different results, e.g. due to use of a live database, "latest" docker image, or stochastic data processing : No
:clipboard: Workflow/Task Step Changes
🔄 Data Processing
When running Terra_2_NCBI_PHB to submit wastewater data to NCBI, the workflow currently searches for a metadata column called ww_surv_target_1_known_presence within the user's data table. However, the metadata field anticipated by NCBI should be called ww_surv_target_1_known_present. This PR fixes this small typo.
This PR fixes a small typo identified while troubleshooting with a laboratory using the Terra_2_NCBI_PHB workflow to submit SC2 wastewater data.
🗑️ This dev branch should be deleted after merging to main.
:brain: Aim, Context and Functionality
:hammer_and_wrench: Impacted Workflows/Tasks & Changes Being Made
This will affect the behavior of the workflow(s) even if users don’t change any workflow inputs relative to the last version : Yes
Running this workflow on different occasions could result in different results, e.g. due to use of a live database, "latest" docker image, or stochastic data processing : No
:clipboard: Workflow/Task Step Changes
🔄 Data Processing
When running Terra_2_NCBI_PHB to submit wastewater data to NCBI, the workflow currently searches for a metadata column called
ww_surv_target_1_known_presence
within the user's data table. However, the metadata field anticipated by NCBI should be calledww_surv_target_1_known_present
. This PR fixes this small typo.➡️ Inputs
Terra Testing
https://app.terra.bio/#workspaces/dhss-dph-terra/Wastewater/job_history/d1d49caa-26cb-4dc8-9fd6-da89297cb155
Suggested Scenarios for Reviewer to Test
Theiagen Version Release Testing (optional)
:microscope: Final Developer Checklist
🎯 Reviewer Checklist
🗂️ Associated Documentation (to be completed by Theiagen developer)