Enable analytical functionality for H5N1 in TheiaCoV workflow to run nextclade on H5N1s by default.
Set the default files (config, reference, etc.) used as part of the Augur pipeline in the organism_parameters subwf like we do for other pathogens to function with H5N1 data.
:books: Context
This is in support of the NE-PGCOE effort to build workflows/workspaces in support of future outbreaks.
:chart_with_upwards_trend: Desired Behavior
End users are able to analyze H5N1 data in Theiagen workflows
:cool:
:pushpin: Explain the Request
Enable analytical functionality for H5N1 in TheiaCoV workflow to run nextclade on H5N1s by default.
Set the default files (config, reference, etc.) used as part of the Augur pipeline in the organism_parameters subwf like we do for other pathogens to function with H5N1 data.
:books: Context
This is in support of the NE-PGCOE effort to build workflows/workspaces in support of future outbreaks.
:chart_with_upwards_trend: Desired Behavior
End users are able to analyze H5N1 data in Theiagen workflows
:information_source: Additional Information