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theiagen / public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
GNU General Public License v3.0
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[theiaprok docs] links to PHBG instead of PHB #624

Closed kapsakcj closed 1 month ago

kapsakcj commented 1 month ago

:bug:

:pencil: Describe the Issue

I just found some docs that are linking to PHBG instead of PHB WDL code. These need to be updated. One example:

https://github.com/theiagen/public_health_bioinformatics/blob/9a10de708d97bbe5a5cbcce80c8e1ef5509f3f24/docs/workflows/genomic_characterization/theiaprok.md?plain=1#L686

:repeat: How to Reproduce

:computer: Version Information

kapsakcj commented 1 month ago

There's some more examples if you search for public_health_bacterial_genomics in this repo: https://github.com/search?q=repo%3Atheiagen%2Fpublic_health_bioinformatics%20public_health_bacterial_genomics&type=code

kapsakcj commented 1 month ago

and here's one reference to PHVG: https://github.com/search?q=repo%3Atheiagen%2Fpublic_health_bioinformatics%20public_health_viral_genomics&type=code

sage-wright commented 1 month ago

this is horrific 😱 i am very sorry and this should be fixed please forgive me for i have sinned

kapsakcj commented 1 month ago

hahah it's no big deal 😆