Closed kapsakcj closed 2 years ago
working on this dev branch https://github.com/theiagen/public_health_viral_genomics/tree/cjk-pangolin-v4-dev
added task pangolin4
, but need to update all workflows that call the task.
task_taxonID.wdl passes miniwdl check
but needs to be tested with real data
v4 hasn't been released just yet, but would be good to have a task ready to go when the time comes
will require:
pangolin4
task--usher
flag requireddocs on usage here: https://cov-lineages.org/resources/pangolin/usage.html Looks to be similar to v3
docs on output format here: https://cov-lineages.org/resources/pangolin/output.html