theiagen / public_health_viral_genomics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
https://public-health-viral-genomics-theiagen.readthedocs.io/
GNU Affero General Public License v3.0
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Fix conditional logic in Mercury Prep N Batch #199

Closed sage-wright closed 1 year ago

sage-wright commented 1 year ago

We merged too soon! Shelly found an issue where the conditional to skip all ncbi tasks was not carried through to the secondary tasks, which would fail because the input data would be missing. Oh no!

This fixes that.