Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
Converting the ivar tasks of TheiaCoV to a workflow in PHB inadvertently hides the min_freq input of the variant call task from the user. We want that exposed because we do manipulate that variable when investigating potential contamination/coinfection in samples.
Converting the ivar tasks of TheiaCoV to a workflow in PHB inadvertently hides the min_freq input of the variant call task from the user. We want that exposed because we do manipulate that variable when investigating potential contamination/coinfection in samples.