theislab / anndata2ri

Convert between AnnData and SingleCellExperiment
https://icb-anndata2ri.readthedocs-hosted.com/
GNU General Public License v3.0
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Convert anndata to sce without using jupyter #175

Closed RunyuXia closed 3 months ago

RunyuXia commented 3 months ago

Hi! I was wondering if it is possible to convert anndata object to sce without using jupyter notebook? Thank you!

flying-sheep commented 3 months ago

Yeah, of course, see here: https://github.com/theislab/anndata2ri?tab=readme-ov-file#usage-from-python