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theislab / cellrank

CellRank: dynamics from multi-view single-cell data
https://cellrank.org
BSD 3-Clause "New" or "Revised" License
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Compute and plot gene module scores over pseudotime #1202

Open sohrabsa opened 2 months ago

sohrabsa commented 2 months ago

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sohrabsa commented 2 months ago

Hi,

It’d be great to add a method to allow the computation and plotting of a module. Something like the plot gene trends function, but for a (potentially pre-computed) score.

Thank you!

Marius1311 commented 2 months ago

That would basically require the cellrank.pl.gene_trends function to accept .obs attributes for plotting - feel free to open a PR for this @sohrabsa