theislab / cellrank

CellRank: dynamics from multi-view single-cell data
https://cellrank.org
BSD 3-Clause "New" or "Revised" License
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Duplicated warning message for not enough cells #174

Closed Marius1311 closed 4 years ago

Marius1311 commented 4 years ago

I call g_fwd.compute_metastable_states(cluster_key='clusters', n_states=11), which prints out:

Computing metastable states
INFO: Using pre-computed schur decomposition
WARNING: The following groups have less than requested number of cells (30): `Ngn3 high EP_1`
Adding `.schur_vectors`
       `.metastable_states`
       `.coarse_T`
       `.coarse_stationary_distribution`
    Finish (0:00:03)
WARNING: The following groups have less than requested number of cells (30): `Ngn3 high EP_1

Can we get rid of the duplication?

michalk8 commented 4 years ago

@Marius1311 it should be already fixed and merged on master? Do you have the current version?

michalk8 commented 4 years ago

I get only following:

Computing metastable states
WARNING: The following groups could not be mapped uniquely: `Alpha_1, Alpha_2`
WARNING: The following groups have less than requested number of cells (400): `Alpha_2, Ngn3 low EP`
Adding `.schur_vectors`
       `.metastable_states`
       `.coarse_T`
       `.coarse_stationary_distribution`
    Finish (0:00:00)

Different warnings, so they should be fine.

Marius1311 commented 4 years ago

Okay, never mind then, will try this again!

Marius1311 commented 4 years ago

If not fixed already, will be fixed by #184.

michalk8 commented 4 years ago

Should be fixed. Closing this.