Closed jonas2612 closed 1 year ago
mhm, thanks for posting. How many cells do you have in your dataset?
So the problem here is that you have a large overlap between macrostates, and when you discretize to find the top N cells to represent each macrostate, one macrostate ends up with no cells (because they are all assigned to another macrostate already)
This can happen if you have either too many macrostates, too few cells, or just two macrostates completely overlapping by chance. I don't think there's anything we can do about this right now.
Trying to run
compute_macrostates
. I get the error:ValueError: Discretizing leads to a cluster with
0samples, less than the threshold which is
1samples. Consider recomputing the fuzzy clustering.
for a certain n_states parameter (in this case n_states=9) ...Jupyter notebook producing error on request (on Helmholtz server)
Versions:
1.5.1+g525b847