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theislab / chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
https://arxiv.org/abs/2204.13545
MIT License
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Remove Trapnell subsampling #61

Closed siboehm closed 2 years ago

siboehm commented 2 years ago

According to Mo, the subsampling in the Trapnell preprocessing (removing 50% of the rows) is mainly done for Performance reasons. Our code should be fast enough, so we can remove it and get more data.