Check for nans/infs in rdkit embedding and normalise features

theislab / chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

https://arxiv.org/abs/2204.13545

MIT License

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Check for nans/infs in rdkit embedding and normalise features #63

Closed MxMstrmn closed 2 years ago

MxMstrmn commented 2 years ago

Closes #56

The notebook is adjusted to set all nans (52) and infs (6), a total of 62 entries from ~ 17k x 201 values to 0.. In addition, the features are normalised and columns with std=0. are deleted.

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siboehm commented 2 years ago

just restarted the runs