Generate Trapnell & LINCS splits for OOD drugs for each pathway

theislab / chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

https://arxiv.org/abs/2204.13545

MIT License

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Closed siboehm closed 2 years ago

siboehm commented 2 years ago

Generate 3 new Trapnell splits, one for each of the 3 pathways (epigenetic, cell cycle, tyrosine kinase). In each split, 10 drugs are left out.

For LINCS we need just one new split, where all 30 drugs are left out.

Part of #67

siboehm commented 2 years ago

Closed by #81