Generate new Trapnell datasets with a large set of genes

theislab / chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

https://arxiv.org/abs/2204.13545

MIT License

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Generate new Trapnell datasets with a large set of genes #78

Closed siboehm closed 2 years ago

siboehm commented 2 years ago

2000 instead of the current 977 genes

Part of #76

MxMstrmn commented 2 years ago

@siboehm, could you check that the logic I used for aligning the genes series between lincs and sciplex is correct, that is identical to the gene series on which we trained the rdkit on?

I guess, right now it is not yet super crucial. But we have to keep this in mind once we start to transfer!

siboehm commented 2 years ago

closed by #81