Add ability to add layers (extended gene set finetuning)

theislab / chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

https://arxiv.org/abs/2204.13545

MIT License

88 stars 23 forks source link

Closed siboehm closed 2 years ago

siboehm commented 2 years ago

This allows adding an extra layer to adjust the input / output dimension. The flag is called append_ae_layer.

I also added the all-zero embedding (closes #88), and fixed a small bug in the preprocessing.

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MxMstrmn commented 2 years ago

Look good. Merging.