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theislab / dca

Deep count autoencoder for denoising scRNA-seq data
Apache License 2.0
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TypeError: Categorical is not ordered for operation max #21

Open bauerbach95 opened 5 years ago

bauerbach95 commented 5 years ago

I'm getting the following error when running DCA. Any idea what might be causing this?

screen shot 2019-01-29 at 12 54 39 pm
madagiurgiu25 commented 5 years ago

I think this is a pandas 0.24 version issue. I encountered the same problem, namely, I could not write anymore an AnnData object to a file using write or write_h5ad function after upgrading pandas. For me worked by switching to an older version (pandas 0.22).