I tried to use the --denoisesubset option, using a .txt file of circa 100 genes. When I run dca on my data with the option, I get the following error
dca data_ready.csv results_DCA --denoisesubset genes.txt
dca: Successfully preprocessed 20896 genes and 12945 cells.
dca: Subset of 116 genes will be denoised.
dca: Calculating reconstructions...
f"Data matrix has wrong shape {value.shape}, "
ValueError: Data matrix has wrong shape (12945, 116), need to be (12945, 20896).
Can you figure out what is the problem ? I guess that the denoised matrix includes only the denoised genes while the output should contain also all the other initial genes.
Thanks for the help, it will be highly appreciated !
Hello,
I tried to use the --denoisesubset option, using a .txt file of circa 100 genes. When I run dca on my data with the option, I get the following error
Can you figure out what is the problem ? I guess that the denoised matrix includes only the denoised genes while the output should contain also all the other initial genes.
Thanks for the help, it will be highly appreciated !