Question: Can DC1 be well correlated to PC1?

theislab / destiny

R package for single cell and other data analysis using diffusion maps

https://theislab.github.io/destiny/

GNU General Public License v3.0

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Question: Can DC1 be well correlated to PC1? #39

Open katsikora opened 4 years ago

katsikora commented 4 years ago

Dear Devs,

I have applied destiny::DiffusionMap to one of our internal datasets, providing the Seurat "data" slot normalized in a standard way as input (log2 (normalized counts + pseudocount)).

When I plot DC1 against PC1 on this dataset, I obtain:

PC1_vs_DC1

Does this say anything particular about the dataset?

Thanks in advance for any hints,

Best,

Katarzyna