theislab / destiny

R package for single cell and other data analysis using diffusion maps
https://theislab.github.io/destiny/
GNU General Public License v3.0
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Unable to install destiny #41

Open PeggySze opened 3 years ago

PeggySze commented 3 years ago

Hi, I tried to install destiny by BiocManager but failed mainly because I couldn't install its dependencies. Here is my installation command lines :

BiocManager::install("destiny")

The following is the warning report:

libtool: link: ERROR: no information for variable 'AR' cru .libs/libutil.a .libs/mt19937ar.o .libs/sobolseq.o .libs/timer.o .libs/stop.o .libs/redblack.o .libs/qsort_r.o .libs/rescale.o 
../libtool: line 1102: ERROR:: command not found
make[2]: *** [libutil.la] Error 127
make[2]: Leaving directory `/tmp/Rtmp2O24sL/R.INSTALL6b25214ec057e/nloptr/src/nlopt_src/util'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/Rtmp2O24sL/R.INSTALL6b25214ec057e/nloptr/src/nlopt_src'
make: *** [all] Error 2
ERROR: configuration failed for package 'nloptr'
* removing '/public/home/shipy3/software/R/library/nloptr'
ERROR: dependency 'nloptr' is not available for package 'lme4'
* removing '/public/home/shipy3/software/R/library/lme4'
ERROR: dependency 'lme4' is not available for package 'pbkrtest'
* removing '/public/home/shipy3/software/R/library/pbkrtest'
ERROR: dependencies 'pbkrtest', 'lme4' are not available for package 'car'
* removing '/public/home/shipy3/software/R/library/car'
ERROR: dependency 'car' is not available for package 'VIM'
* removing '/public/home/shipy3/software/R/library/VIM'
ERROR: dependency 'VIM' is not available for package 'destiny'
* removing '/public/home/shipy3/software/R/library/destiny'

And here is the information of my R session:

R version 3.6.0 (2019-04-26)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.10 compiler_3.6.0      tools_3.6.0    

Counld anyone please tell me what is going wrong? Thanks a lots!